rs33145232 SNP Detail

Summary

• ID
  rs33145232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155319661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACTCTC TCTCTCTCTC
  TTTGCCCCCA ACCCTGCAGA GTCTGCCTGA GGCCAGAGTT CAGCCTTAAG GAGCAGGAAG
  CTGAGCTCCT TCAGCAGGCT GGCCACTTCC CCTTTCTGAG GAAGAGACAC CCCAGTGGAG
  CAGCTTTCTA TGTCCTACCA GAGGCCATAT GCCTGCAGAT GTCCCCAGCT GGGAGACTAT
  Y
  TCATACCATA TTCTGAGAGG AGGCAATCTC CTAATAGTAC CAGAGACACC TAGATCACAA
  GCCCGGTGGG TGACAGAGGC CTGGAAGTAC CATGGCCCCT CTCATTAGTT TCCAGGATGG
  AGTCTCTGTC CTCGTGAGCA AGAGAACTTG TATTCCTTTC TCTTTTCAGA CTCTGATTCT
  TGGAACTTAC ACCCTCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss46777555	NES11004286	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs33145232					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777555	NES11004286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155319661 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	within coordinates
Rr1208	regulatory region 1208	within coordinates
Rr88175	regulatory region 88175	1061 bp distal
Tssr40624	transcription start site region 40624	657 bp downstream
Tssr40625	transcription start site region 40625	282 bp upstream