rs33145410 SNP Detail

Summary

• ID
  rs33145410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124134977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG CAAACCAGGG GTCCATCCTC
  Y
  CGGTACCGCC CTGCAGGCAC AGCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45743222	mCV23284250	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321672182	CHEV_5_124446923	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33145410					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124134977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16597	CpG island 16597	783 bp proximal
Hip1r	huntingtin interacting protein 1 related	within coordinates
Mir7032	microRNA 7032	within coordinates
Rr620317	regulatory region 620317	548 bp distal
Rr620318	regulatory region 620318	1649 bp proximal
Tssr48830	transcription start site region 48830	448 bp upstream
Tssr48831	transcription start site region 48831	1761 bp upstream