rs33147020 SNP Detail

Summary

• ID
  rs33147020
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95799117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAATCTG AGTTCAGTCT
  TGCCGAAGGA ACTCTCTTTA GAGTCCCATC CTCCACCGGC CTGTGTCTTA TTTGACAAGA
  CTTCGCTTTG CTTTGCCTTT GGTTTCCTGG CTCCACCTTC CAGATCCCTG CTCTGCCCCC
  AACCCTGGAC TCCAACAGCT GAGAAAAGCA GTACAGCTCC CCGCTGAAAT GCCCGACGTA
  M
  TGCTCTCTGT TTCCTTTTCT CTCATCCCAT TTATAGCAAA AGACCTGGCA CAAAAGGCCA
  GGGTCAGAAG GAGACTTACC CAGGATGAGT GGTGCAACAA GGAGGGCTAT AAAGAGGACA
  TCCATTCTGG GTTTTGCACT ATCACTGTGT AAGTTAAAAG AGGAAATTGC TGTTTCCCAC
  CACACTTACC CCGCCTCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777850	NES10736804	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33147020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777850	NES10736804	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95799117 () rs orientation: forward

Symbol	Name	Function Class
BC028528	cDNA sequence BC028528	within coordinates
Cpgi13526	CpG island 13526	1896 bp proximal
Rr78078	regulatory region 78078	within coordinates
Rr78079	regulatory region 78079	1283 bp proximal
Rr397845	regulatory region 397845	1911 bp upstream
Tssr34557	transcription start site region 34557	124 bp downstream
Tssr34558	transcription start site region 34558	133 bp downstream
Tssr34559	transcription start site region 34559	1023 bp downstream
Tssr34560	transcription start site region 34560	1061 bp downstream