rs33147023 SNP Detail

Summary

• ID
  rs33147023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95800514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT CATACAAATG ATGATTCCTG
  M
  TAATATGAAA TCTCTCTCCC CAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
ss46777853	NES10736760	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
rs33147023					SNP	A	A	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777853	NES10736760	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95800514 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	767 bp upstream
BC028528	cDNA sequence BC028528	1197 bp upstream
Cpgi13526	CpG island 13526	499 bp proximal
Cpgi13527	CpG island 13527	1067 bp proximal
Rr397845	regulatory region 397845	514 bp upstream
Rr581074	regulatory region 581074	1283 bp distal
Rr581075	regulatory region 581075	707 bp distal
Rr581076	regulatory region 581076	277 bp proximal
Tssr30653	transcription start site region 30653	718 bp upstream
Tssr30654	transcription start site region 30654	751 bp upstream
Tssr30655	transcription start site region 30655	811 bp upstream
Tssr34557	transcription start site region 34557	1266 bp upstream
Tssr34558	transcription start site region 34558	1217 bp upstream
Tssr34559	transcription start site region 34559	357 bp upstream
Tssr34560	transcription start site region 34560	325 bp upstream