rs33147249 SNP Detail

Summary

• ID
  rs33147249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95725285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTACCAATG ATGATTACAG TCTCGCAGTT GTGTCTCGTC
  AGTATCCCGT GGTCTGTATT TTAGTGTTGC AAACACAGGT AAAAGGAAAA CAGGTGGTCG
  Y
  CTCACAGCTC TGTAGAGTTC CTATTGCTTC ACATTCATCC AGGGAAAGCC TCCTTAAAAC
  ACACGCCAAG TTTCACCCAC AGTCATCAAG AGAAGGCCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46777217	NES10741250	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33147249					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777217	NES10741250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95725285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	224 bp proximal
Gm29948	predicted gene, 29948	902 bp upstream
Rprd2	regulation of nuclear pre-mRNA domain containing 2	Intron
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	775 bp proximal
Rr581039	regulatory region 581039	1075 bp proximal
Rr581040	regulatory region 581040	1576 bp proximal
Tssr30646	transcription start site region 30646	1346 bp upstream
Tssr34543	transcription start site region 34543	774 bp downstream
Tssr34544	transcription start site region 34544	848 bp downstream
Tssr34545	transcription start site region 34545	922 bp downstream
Tssr34546	transcription start site region 34546	968 bp downstream
Tssr34547	transcription start site region 34547	1085 bp downstream
Tssr34548	transcription start site region 34548	1238 bp downstream
Tssr34549	transcription start site region 34549	1373 bp downstream