rs33147724 SNP Detail

Summary

• ID
  rs33147724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34878308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATTCG TGGCATCCAA
  GCAAGTGGAT ACAATGTGTT CTGCTACATA GAATGATTTA TGGCATCTGG GGCTTAGCTG
  TATTTATTTA TTTGTCAATA CAGGAAGTTA GAGGTTATCT CCTAAGAAAC AGTCAGGAAT
  GTCACCTGGG GCTAGAGGAA GCTCTGTCCT ACACACTCAC ACAGTCAGCT ATCACCCTAT
  Y
  AGCATTTAAA ATAAACCCTA CACTGGACCC AAAGTGAATA AAGGCTCTTG CTGCCAGGCC
  TGATGGTGTG AGTTCAATCC CTGGAATGGA GAAAACCAAC TCCTTTGTAG TTCTGACTCC
  TACATAAGTG CTGTGGCATG CATGTACTCC CCAACTCCTA CATGCATACT GTAAAAACAC
  TAAGACTTTC CCTCTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49449276	NES12597238	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33147724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449276	NES12597238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34878308 () rs orientation: forward

Symbol	Name	Function Class
Rr500781	regulatory region 500781	1137 bp proximal
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	1934 bp upstream
Tssr133983	transcription start site region 133983	1821 bp upstream
Tssr133984	transcription start site region 133984	660 bp downstream