rs33147727 SNP Detail

Summary

• ID
  rs33147727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTGCAG GTGGTACTCT
  GCAGGTGATA CATTGCAGGT GGTGCACTGC AGGTGGCACT CTGCAGGTGA TACATTGCAG
  GTGGTGCTCT GCAGGTGATA CTCCACAGAC AGCTTTCTAC TCCCTGTGCT TTGCCAACTC
  TACCATGAGC AAAAACCCAA TGCCAACAGA CCAAGAACTA GGCCAAACTC AATACAAATA
  Y
  CTAACATTTC ACCTCTTAAA CAGAAAATTA AATTAAATTT TTAAAATGAT TTATTTATTT
  ACTTTGTACA TATGAGTTCT CTATCTATAT AAACTACCTA CACACCACAA AAGGGCATCA
  GATCTCATTA CAGATGGTTG TGAGCCACCA TCTGGTTTCT GGGAATTGAA CTCTGGGTCT
  CTGGAAGAGC AGCCAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49449280	NES12597379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33147727					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449280	NES12597379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877486 () rs orientation: forward

Symbol	Name	Function Class
Rr500781	regulatory region 500781	1959 bp proximal
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	1112 bp upstream
Tssr133983	transcription start site region 133983	999 bp upstream
Tssr133984	transcription start site region 133984	1482 bp downstream