rs33147729 SNP Detail

Summary

• ID
  rs33147729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGAAAA AAAGTAAGAT
  GAAGAAACCT GTTTGAAAAG GCCCAGAGAA AAATGTGCTA CTGTCAAAAG CAGCCTGAGT
  GATGCGCAGT GGGTGGTGCA CTGCAGGTGG TACTCTGCAG GTGATACATT GCAGGTGGTG
  CACTGCAGGT GGCACTCTGC AGGTGATACA TTGCAGGTGG TGCTCTGCAG GTGATACTCC
  R
  CAGACAGCTT TCTACTCCCT GTGCTTTGCC AACTCTACCA TGAGCAAAAA CCCAATGCCA
  ACAGACCAAG AACTAGGCCA AACTCAATAC AAATACCTAA CATTTCACCT CTTAAACAGA
  AAATTAAATT AAATTTTTAA AATGATTTAT TTATTTACTT TGTACATATG AGTTCTCTAT
  CTATATAAAC TACCTACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49449282	NES12597378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33147729					SNP	A	A	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449282	NES12597378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877390 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	1016 bp upstream
Tssr133983	transcription start site region 133983	903 bp upstream
Tssr133984	transcription start site region 133984	1578 bp downstream