rs33147731 SNP Detail

Summary

• ID
  rs33147731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAATAGT GTATAATCAT
  TCAAAATACA GAGAAGCCTA ATGAGTTTTA GAATAAATAT TTCAGAAAAT TCTTTACATG
  ATCTTTAAAG CATGTCAACA ATTAAAGCAA GAATTCCTTT TCTGAAGGAG CCACACCACA
  CTACAGGAAC CTCAAAGAAT TCAGCAAAGG GATCAACGCC TGCACTGTCA GAGAAGACTA
  Y
  ATGATGAAAA AAAGTAAGAT GAAGAAACCT GTTTGAAAAG GCCCAGAGAA AAATGTGCTA
  CTGTCAAAAG CAGCCTGAGT GATGCGCAGT GGGTGGTGCA CTGCAGGTGG TACTCTGCAG
  GTGATACATT GCAGGTGGTG CACTGCAGGT GGCACTCTGC AGGTGATACA TTGCAGGTGG
  TGCTCTGCAG GTGATACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49449284	NES12597377	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	C	T	C	T	C	T
ss147562941	ENSMUSSNP1020686	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33147731					SNP	C	T	T	T	T	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449284	NES12597377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877189 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	815 bp upstream
Tssr133983	transcription start site region 133983	702 bp upstream
Tssr133984	transcription start site region 133984	1779 bp downstream