rs33147847 SNP Detail

Summary

• ID
  rs33147847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69694119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC CCTTCTCTCT TTCTCTCTTT
  Y
  CTGCCCCACT TCCCCATGGA GACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45242678	mCV25170109	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146730547	ENSMUSSNP1734778	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320332360	CHEV_2_69701832	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33147847					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69694119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11719	CpG island 11719			1630 bp distal
Rr558484	regulatory region 558484			1065 bp distal
Ssb	small RNA binding exonuclease protection factor La			Intron
				Noncoding-Transcript-Variant
Tssr18176	transcription start site region 18176			1597 bp downstream