rs33147870 SNP Detail

Summary

• ID
  rs33147870
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57873860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TTGGCAGACT GCGGTGGTCA
  C
  GAGTGAGAAC CGGGGAAGCC TCACG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45743501	mCV24207273	ABI	CRAMUS_MOUSE	f	SNP	C	C
ss148495440	ENSMUSSNP5359904	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321551260	CHEV_5_58107757	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33147870					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57873860 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	133 bp distal
Cpgi15875	CpG island 15875	334 bp proximal
Gm73136	predicted gene, 73136	within coordinates
Pcdh7	protocadherin 7	1449 bp upstream
Rr611758	regulatory region 611758	1529 bp distal
Rr611759	regulatory region 611759	129 bp proximal
Rr611760	regulatory region 611760	1099 bp proximal
Rr611761	regulatory region 611761	1590 bp proximal
Tssr1483	transcription start site region 1483	1620 bp upstream
Tssr46283	transcription start site region 46283	345 bp downstream
Tssr46284	transcription start site region 46284	407 bp upstream
Tssr46285	transcription start site region 46285	709 bp upstream
Tssr46286	transcription start site region 46286	811 bp upstream
Tssr46287	transcription start site region 46287	962 bp upstream
Tssr46288	transcription start site region 46288	1015 bp upstream
Tssr46289	transcription start site region 46289	1143 bp upstream
Tssr46290	transcription start site region 46290	1227 bp upstream
Tssr46291	transcription start site region 46291	1517 bp upstream
Tssr46292	transcription start site region 46292	1746 bp upstream