rs33147916 SNP Detail

Summary

• ID
  rs33147916
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95801106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA GACTCCAGCC TACTCTTCTG
  W
  AGCCACTCCC AGCACCAAGA GGAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss46777856	NES10736762	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs33147916					SNP	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777856	NES10736762	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95801106 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	175 bp upstream
BC028528	cDNA sequence BC028528	1789 bp upstream
Cpgi13526	CpG island 13526	within coordinates
Cpgi13527	CpG island 13527	475 bp proximal
Rr78078	regulatory region 78078	905 bp distal
Rr78079	regulatory region 78079	within coordinates
Rr397845	regulatory region 397845	within coordinates
Tssr30653	transcription start site region 30653	126 bp upstream
Tssr30654	transcription start site region 30654	159 bp upstream
Tssr30655	transcription start site region 30655	219 bp upstream
Tssr34557	transcription start site region 34557	1858 bp upstream
Tssr34558	transcription start site region 34558	1809 bp upstream
Tssr34559	transcription start site region 34559	949 bp upstream
Tssr34560	transcription start site region 34560	917 bp upstream