rs33148010 SNP Detail

Summary

• ID
  rs33148010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151584497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGTTAA CATGCCACAG
  GTCTTGCCCT GATGGAACTT TGTAGTGTTT CTTTTTAATA GACAAAAAGC AATCCAGTAT
  GAAATCTGTC ATTTGGGGGT GCTGAGAGAG CTATACAAGG CCCACAGGAA GCCTATGTTC
  CAAGCAAGGA TCAGGAAGGG TTTCTTGGAT TAAGAAATGG CCAATTGCAC AGAACTCTCA
  Y
  GGAAGAATAA AGAAGAAATG TTCCTGTAAA AGCATATAGC ATACGTGAAG GCACCAAGGT
  GGGAAATGTA GCTACCCCCG TGTAACTGGA GACTCAACAC TGCCCCTCTC ATCTCTTCCT
  CATCTTTAAC TACTCTCCAC ACCTGTCCTC AGCCTGGATG TCATGACCCC CAGGGGTTGC
  ATAGCAGATT TCCCTCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45243393	mCV22908777	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147957943	ENSMUSSNP3134425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320561214	CHEV_2_151568313	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33148010					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151584497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12424	CpG island 12424	1111 bp distal
Psmf1	proteasome (prosome, macropain) inhibitor subunit 1	within coordinates
Rr567193	regulatory region 567193	1329 bp distal
Rr567194	regulatory region 567194	777 bp distal
Rr567195	regulatory region 567195	143 bp distal
Rr567196	regulatory region 567196	77 bp proximal
Tssr26747	transcription start site region 26747	1407 bp upstream
Tssr26748	transcription start site region 26748	1400 bp upstream
Tssr26749	transcription start site region 26749	1359 bp upstream
Tssr26750	transcription start site region 26750	1351 bp upstream
Tssr26751	transcription start site region 26751	1268 bp upstream
Tssr26752	transcription start site region 26752	1565 bp downstream
Tssr26753	transcription start site region 26753	1629 bp downstream