rs33148075 SNP Detail

Summary

• ID
  rs33148075
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123367231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCTACA TAGTAAGCTC
  GAGGCTGTCC TGGGTTATAT TAGACCTTGT CTCAAAAAAA AACCAAAAAA AAAAAAAAAA
  AAAAAAAACA AAAAAGAAAA GTAAAAATGA AATGCAGACT CTAATTGGGA TAGGGAAAAG
  ACTCTGGATT TTAAGAAAAC CCTCACCTCT GCTAATTGCT CTTTTAAGTG GAGCCAGATT
  M
  AGCACATTGT CTTTACTGTA AAAGGGGAAA CAGGGCCAGA GTGGAGCCAA TGCTTGCCCA
  GTTAGGAAGG GGGAATGGTT GGCTCTGTGA TCTGTTTACC TCCTAAGCAG ATATATTTTT
  CATAAAACCC CAAGTCAGTG TATAGAGGAA GGGGAGGCTA AATCACACTC ATTGCTGGGC
  ACAATGACAT CTGGGTGATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45743059	mCV25107610	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss149193635	ENSMUSSNP1539361	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321670461	CHEV_5_123679177	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33148075					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123367231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	461 bp distal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	within coordinates
Rr124341	regulatory region 124341	within coordinates
Rr399344	regulatory region 399344	797 bp downstream
Tssr48774	transcription start site region 48774	941 bp downstream
Tssr48775	transcription start site region 48775	867 bp downstream