rs33148685 SNP Detail

Summary

• ID
  rs33148685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34876567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACAAA AAAACCCCAA
  GAAAGTGAAA CTGCATAAAT AAATAAGTCT ACCTGGGGGG TGGGAGGGGG ATCAATAAAT
  AGGCTTCTCC ATAGGAATAA AGGACATTGG AACACAAAGC CCTCCAGTGC TGTATGATTG
  ACTAAGCAAC AGCTTTGGAT TTCTAGTCTC CACATACAGC TTTCATTTTA GATTAGTTCT
  S
  TTGCAGGTGG AATAGCAGGC AGAGAGAGAA GTGCGCACGT TTGTTGTTCT CATCCTTTCA
  AAACGACATC AGAGTGGAGA CAACTGTAAA GTTTGCTTTT GGGAAATTTA TCTAGGTGTG
  TACCATCATT TTTGAGTTTT AAAAAATTGT AGAATATACA TTTTAGGGAT TAAAAAGTAG
  AATTCCTTCA ATTCTTGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49449290	NES12597374	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	G	C	G	G	C
ss147562927	ENSMUSSNP2250654	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33148685					SNP	G	C	C	C	C	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449290	NES12597374	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34876567 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	193 bp upstream
Tssr133983	transcription start site region 133983	80 bp upstream