rs33149520 SNP Detail

Summary

• ID
  rs33149520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155317199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCGGAA GAACAGTCGG
  ATGCTCTTAC CCACTGAGCC ATCTCACCAG CCCTCACCCA GACTTTTACA CATGAAATAT
  ACCTGTCATA CCTCCCAGCA CTCAGGTCAG GCCCTGAGAT CTTTCTCTTA AGTAGAGGGA
  GTCCAGCCTT CGGGCCCAGA CCAAGTCTTC CTGTGAGCCC CAACACCTTC CTCTCTTCCT
  Y
  CTTGCTTCTC CCCTTCGTGG GTCAGTCCCA TGCTGAGCAC CTAAGCAGCC CCAACTTCTT
  TCCACATTCC TCTTGCAGAC CTAGAAATCA GGGCCTCAGA CCCTCGCCAG GGGCTGCCTA
  CCTCTCAAAA TTTACCCTCC TAATAGGCTG ATGAGCCAGG TCCCTCCTGA ACCGTGTCCC
  CTCACTTTGC CTCTTATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777501	NES11004292	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33149520					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777501	NES11004292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155317199 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	1365 bp upstream
Rr1208	regulatory region 1208	1937 bp upstream
Rr88175	regulatory region 88175	1002 bp proximal
Tssr40624	transcription start site region 40624	1794 bp upstream