rs33149584 SNP Detail

Summary

• ID
  rs33149584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34875189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAGTTTC TGTCCATTTC
  CAGTAGGTGT TTTTGCTTGG GTTCCACCAG GTGTTAGGCT GGTGACAAGA AAGACTATTA
  AGGAAGAACA CCTGGGTAGT GTGTGAGCTG ATGAGCATGT CTCATAGTTT GTAAGTGGAC
  TCTGATAATG GTGAGTGGGA TCCTGGGAAA TGTCTAACAT AGTATACACA TTGGGATGCA
  Y
  GAAGCAAGTC ATTAGTGTCG TGTCATCTTA TTTTCAGTCT TATAATTTAT ACATAATTAT
  ACAATATGCT TTTCATAAGG ATCCAACAGA ACTGAACCAA CATCACTTCA AGGCATGACT
  GTGGGCACAG TACTATTTTA AAATGGTAGA CACTTTCCAT AGCTAATTTG TCTTCTGTGG
  ATTAGCTCAA AGGAAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49449302	NES12597368	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	C	C	C		T
ss324921268	CHEV_15_34804798	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33149584					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449302	NES12597368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34875189 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	456 bp downstream
Tssr133982	transcription start site region 133982	1167 bp downstream
Tssr133983	transcription start site region 133983	1287 bp downstream