rs33149586 SNP Detail

Summary

• ID
  rs33149586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34874982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGTAAAA CAATACTTAC
  TGCTCCTAAT TCCCCTAAAA TATATGTGTA TGTGTAGATG TGTAGATGTT TTCTATAACA
  CGGTATAAAG TATTCATAAG TAATTAGAAC ATGACATTAC TAAAGAGAGC CCCGTCCTGC
  CCCAGGCACC ACAGGAAGTA CAAGTGGCTA AGTCCCTCAT TGAGTCAGAT GGGCAGAAAT
  Y
  ACCTTTGTTA AGTTTCTGTC CATTTCCAGT AGGTGTTTTT GCTTGGGTTC CACCAGGTGT
  TAGGCTGGTG ACAAGAAAGA CTATTAAGGA AGAACACCTG GGTAGTGTGT GAGCTGATGA
  GCATGTCTCA TAGTTTGTAA GTGGACTCTG ATAATGGTGA GTGGGATCCT GGGAAATGTC
  TAACATAGTA TACACATTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49449304	NES12597367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33149586					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449304	NES12597367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34874982 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	663 bp downstream
Tssr133982	transcription start site region 133982	1374 bp downstream
Tssr133983	transcription start site region 133983	1494 bp downstream