rs33149855 SNP Detail

Summary

• ID
  rs33149855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGATG GAGAACGGCA CCCGGTCCTG
  S
  GAAGAGCGCC CACCCGCGGA CCCGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46240371	mCV24193297	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss145392104	ENSMUSSNP1084515	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss322751353	CHEV_8_87213688	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33149855					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing			1890 bp upstream
Rr666573	regulatory region 666573			1898 bp distal
Rr666575	regulatory region 666575			1554 bp distal
Rr666576	regulatory region 666576			315 bp distal
Rr666577	regulatory region 666577			546 bp distal
Rr666578	regulatory region 666578			3 bp proximal
Trmt1	tRNA methyltransferase 1			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr78430	transcription start site region 78430			486 bp downstream
Tssr78431	transcription start site region 78431			471 bp downstream
Tssr82114	transcription start site region 82114			1905 bp upstream
Tssr82115	transcription start site region 82115			1879 bp upstream