rs33150497 SNP Detail

Summary

• ID
  rs33150497
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162501788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTCCTCC CCTGATTTCT TATGTGAGCA CAGCTGTTGC
  TTAGCAATCC AAAAAGAACC CTTTCCTAAG TTCCGCTGAC ATGCCTCAAC GTGCCCCCCG
  M
  CCCCGACCCC GACCAGCGAC AGCAGCTCAG TGTGGTCACT CCTAAACCAA AGGTGCTAAG
  AAACTTCGAG GTGATTTTGA ACTTGGAGGT ATCCCTCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45243231	mCV22937969	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33150497					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162501788 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	1295 bp upstream
Cpgi12617	CpG island 12617	291 bp proximal
Ptprt	protein tyrosine phosphatase receptor type T	within coordinates
Tssr21417	transcription start site region 21417	1324 bp upstream
Tssr21418	transcription start site region 21418	1376 bp upstream
Tssr21419	transcription start site region 21419	1436 bp upstream
Tssr27272	transcription start site region 27272	1181 bp downstream
Tssr27273	transcription start site region 27273	1207 bp downstream