rs33151582 SNP Detail

Summary

• ID
  rs33151582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106605868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG GATAATGGGA GGTGACAATT
  R
  GTGGGCACTT TCGACTCAAC TTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45744008	mCV24423131	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss149007526	ENSMUSSNP888190	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33151582					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106605868 () rs orientation: forward

Symbol	Name	Function Class
Barhl2	BarH like homeobox 2	within coordinates
Cpgi16165	CpG island 16165	within coordinates
Gm33151	predicted gene, 33151	683 bp upstream
Rr123962	regulatory region 123962	within coordinates
Tssr47756	transcription start site region 47756	677 bp upstream
Tssr52338	transcription start site region 52338	48 bp upstream
Tssr52339	transcription start site region 52339	407 bp downstream
Tssr52340	transcription start site region 52340	453 bp downstream
Tssr52341	transcription start site region 52341	475 bp downstream