rs33151718 SNP Detail

Summary

• ID
  rs33151718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCGAAA AAACAAACAA
  ACAAAAAACA CGAAGGCTCT TTCTTTACCG AACGAGTGAT TCCAACAGAG AGACTTTGTA
  AAGGTCCATT ACAGAGAGAG TTAGGACTTA TTTTTCCGTC TTTTAGTCAA TCACAGCTGA
  AGGTAGTTTG TCAAAAGTAT CAAAGTAAAA TCATCCTTAA ATCCTTTTTA TTAGAACCAA
  Y
  GAACCACTTT AGAATGTTTG CATCAGTTTG TTTTGTACAG TAGAAGTTTC TTTGGAGGTC
  TGAGAAACAT GGAAAAGGTC TTGGACTGCA GGCCATCCTA GGCCACATAG CCAGTCCTAT
  CCTCAAACAG ACAAGGATGG AGCAGAGTGT AGCACAAAGC TAGTGGTTTG GTCCCTGCTA
  TTTGAAGAAG GAGAGGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46778198	NES10734247	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33151718					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778198	NES10734247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	960 bp distal
Gm56819	predicted gene, 56819	1159 bp upstream
Gm65572	predicted gene, 65572	764 bp downstream
Rr375411	regulatory region 375411	562 bp downstream
Rr581095	regulatory region 581095	1170 bp distal
Rr581096	regulatory region 581096	1112 bp distal
Rr581097	regulatory region 581097	466 bp distal
Rr581098	regulatory region 581098	648 bp proximal
Rr581099	regulatory region 581099	1679 bp proximal
Tssr30663	transcription start site region 30663	1364 bp downstream
Tssr30664	transcription start site region 30664	1083 bp downstream
Tssr34570	transcription start site region 34570	1414 bp upstream