rs33152204 SNP Detail

Summary

• ID
  rs33152204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97744302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGCTAT TAAAGCAAGA
  AAGCTGACTG CCATCTTTTA TTGAGCAAGT GGTTGTTCTT CTGCAGGTGA GGAACTTCAT
  GATCTTCTTA TTTTTGCAAA CTTTTATAAT AAAACTCAAT ACTAATCTCC ATATTTGATA
  GATGAAGAAA CTGAGCATGC AATGAGCTGG GTAAATTGCC TATTGCAAAA TATACTTAAG
  R
  CTTAGGATAC TCGATTTCAA CCTATGTGGA TCCAATTCTC CTTCAACTAT GACTACTTGA
  CCTTTTCAAA TGACATTCTA ATTCTATAGT AAGAGTTTTC TTTCCAAGTC ACTTCCATCG
  TGACCTGGGT GATGCTGGGA GATATCTGTT CCCAACCTCT TAATATCAAC ATGTTCAATG
  ATCTGAAATA ACAAAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47762585	NES11294737	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33152204					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47762585	NES11294737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97744302 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	1499 bp proximal
Rr205510	regulatory region 205510	1459 bp proximal