rs33152209 SNP Detail

Summary

• ID
  rs33152209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97744507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACTCGA TTTCAACCTA
  TGTGGATCCA ATTCTCCTTC AACTATGACT ACTTGACCTT TTCAAATGAC ATTCTAATTC
  TATAGTAAGA GTTTTCTTTC CAAGTCACTT CCATCGTGAC CTGGGTGATG CTGGGAGATA
  TCTGTTCCCA ACCTCTTAAT ATCAACATGT TCAATGATCT GAAATAACAA AGACATTCAC
  R
  TCTAGGACAT ATAACAACAT TGACCTTCAG TTGAATGTTT GTTTTTAAAT TACCCAATCA
  AGAAATCACC TCCTTCTTGT GAGAAGTCTT GCTAGGTAAT GCTATTAAGA CATTTAAAGT
  TTCCACATGA AATCAGAGGC ACACGTTCCT GTAACACATC TCTTCAATCT GTCCCTTCCC
  CTGTGTTCTG AAGGCCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47762590	NES11294742	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G		G	G	A	A		G
ss323123515	CHEV_9_97762873	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33152209					SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47762590	NES11294742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97744507 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	1294 bp proximal
Rr205510	regulatory region 205510	1254 bp proximal