rs33152213 SNP Detail

Summary

• ID
  rs33152213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97745340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGTGTC TGAGTTGAGC
  TACAGGAGTA ATTCCAGCCA ATGAACTGTG AGCAAAAGTG ATTCTTTTTC TAACTTCTAG
  CCTAGCACAG CTAAAGTCAC GTGTTTCTTT CTTATCAGTT TGACCCCTTC TTTGTCATGT
  GCAGAAGATG GCATACTTAT AAGAAAGAAT CAGCTTCTGT CTCTGAGCCA CATGTTAGAG
  Y
  TGCTGCAGAA ATGAATTGGC TACATCCAGC AAGCTTTGCC AGCGTTCAAC TCTACTTTTG
  ATTTGGGAGG GGTGGTTGTT ATGCATTGCT ACTTGGTCTC TCTGACTAAT ATGCAGGGAG
  AGGAGCTAGT AGAAAGAAGG GAGATTCTTA CAAAGAAAAT ATGGTAACTT GATAGGCATT
  TTAAGATTAT CCAATGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47762594	NES11294681	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T		T	T	C	C		T
ss323123519	CHEV_9_97763706	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33152213					SNP	T	T	C	T	T	T	T	T	T	T	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47762594	NES11294681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97745340 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	461 bp proximal
Rr205510	regulatory region 205510	421 bp proximal