rs33152808 SNP Detail

Summary

• ID
  rs33152808
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97746817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAGAGCA GCTTAACACA
  CTAGCATGAG TGTTGTTTGT CTGGTGACTA ATTGATAAAA TAGCAAGTTA GGATACATCT
  TAGGCCAGCA TAAGAACACA CAGTCCACTG GCATGGATGG GTGTCACAGA GGGAAGGAAT
  GAACAGGAAA TCAAAATAAC CAAGTGAGTG GCTATTGCAC AGCAGAAATA TGATCTCGTG
  K
  GAGTCTTATA AACGTCCTAG TAGCAGCATG GTAAAAGAGA AGAACAAACG ACTGGTCCTG
  GATATTAGTA ATGCTGCATT TGACCTGAGG GCACCAGCCA GTCTTTACCC CAGAAGCTCC
  CTGCAATCTC ACTTCCCTCT GTTTGTCCAC AAGCGTCTTC AGTCACACAT CCTGACCAGG
  AAAGGTACCA TCAAAGTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47762600	NES11294644	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	G	G		T
ss323123530	CHEV_9_97765183	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33152808					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47762600	NES11294644	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97746817 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	817 bp distal
Rr205510	regulatory region 205510	857 bp distal