rs33153189 SNP Detail

Summary

• ID
  rs33153189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26087483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA GACGCCGAGG GAGCCCTTGT
  Y
  CGCTGCGAGG TGACTAAGGC CCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46241400	mCV25261777	ABI	CRAMUS_MOUSE	f	SNP		T						C		T
ss60582828	NES16320615	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	T		C	T	T	C		C
ss148869861	ENSMUSSNP5002868	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss322532329	CHEV_8_26707939	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33153189					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582828	NES16320615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26087483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	within coordinates
D830025C05Rik	RIKEN cDNA D830025C05 gene	within coordinates
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	within coordinates
Rr368506	regulatory region 368506	within coordinates
Rr400804	regulatory region 400804	218 bp downstream
Tssr76686	transcription start site region 76686	340 bp downstream
Tssr76687	transcription start site region 76687	227 bp upstream
Tssr80717	transcription start site region 80717	429 bp upstream
Tssr80718	transcription start site region 80718	within coordinates
Tssr80719	transcription start site region 80719	74 bp downstream
Tssr80720	transcription start site region 80720	144 bp downstream