rs33153259 SNP Detail

Summary

• ID
  rs33153259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72170689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTAGATGGGC CTCAAACTCA TGGTAATTCT CTGGCTTCAA CTACCCCCAG TGCCAGCAAT
  ATATATATTT TCACTTCTGA TGCTAGCACT CAGAATCATA ACTCTCCCTA TGAGTAGTGA
  TCTTCATTTC AGTAGAGGAG ACATCAGACC CCTGGGGCAT GATTTAAAAG GGGCATGCAG
  CCCAGTGCAA TGGCTCAATG GATGAAGGTG CTTGCAGCCA AGCCCAGTGA CATGAGTTCA
  AACCCCAGAA CACACACGAT GGAAGCAGAG AACCAGGTCC TCTGCCCATC ACATGCCCCA
  K
  GCACACAGAC CCTCTACACA GATAAGATCA AAATAGAAAG TAAAATAAAG ATAAACAAAG
  GCATCTCAAG GCAGAAGTGG GCCTGCGGGA TTGGAGGAAC TGGGATGAAC AGGTCATTTG
  ATTCCCAGAA CCCCAGAAGA TCTGCCCCCT TGACCCTTCC TGGAGTCCCA GGGAAGGTGC
  TTTGAGGGAG AGCTCTGGTG GGCGTGTCCC AGCACCCAGT CTCCGAGTGG GTGTGGCTCA
  CCTTTCCCTA ATGAAGTCAG CCAGCTCCTT GGTGGCCACA GGACCCTGCT TCACACAATG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46241601	mCV22796533	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33153259					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72170689 () rs orientation: forward

Symbol	Name	Function Class
Fcho1	FCH domain only 1	within coordinates
Rr186857	regulatory region 186857	1911 bp proximal
Tssr81753	transcription start site region 81753	828 bp upstream
Tssr81754	transcription start site region 81754	1182 bp downstream