rs33153496 SNP Detail

Summary

• ID
  rs33153496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95860733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTGTGT GTTCAGTCTT
  TGGGAGTCAT TTGTGGTTCA CAGATTAAAA AATGCCAAAT TATGCACAGA TCCAGCTATT
  GTTAAAGGCA TCTTGTTTAA CAAACATGGA TACCTGTGCT TGAGGCACCT GCACAGTAGA
  CAGCAAAGTG AATAATTCAT GACTCCAGCC TTGCCAAACA AAGTCTGAGC AGACCCTTTG
  Y
  GCCAGAGAGA AAGAGCAAGC AGGGAAATGG CTGCACTGAC AGCTTGGACC CAGGAGGCTG
  ACAGGACGCT AGAACTTCAT TTGCTCATTT CAGGGAAGGT CTGATCGTCT GTTTTGCACC
  TCACCATGTT CCTGCAATGC CCACCCACTG TGACTCATGG GATGTGCTGG GGAGAGTTAC
  TGGGGTCTAC ACCTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778219	NES10734233	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33153496					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778219	NES10734233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95860733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	1931 bp distal
Gm65572	predicted gene, 65572	1735 bp downstream
Rr375411	regulatory region 375411	1533 bp downstream
Rr581097	regulatory region 581097	1437 bp distal
Rr581098	regulatory region 581098	within coordinates
Rr581099	regulatory region 581099	708 bp proximal