rs33153791 SNP Detail

Summary

• ID
  rs33153791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24716862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGAACTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCGTCTG CCTCTGCTCC
  CCCCCAACCC CCCCCCCCCC CAGTGCTGGG ATTAAAGGCG TGTGCCACCA CACCCGGGCT
  GGCCCTGAGC TTGCAGCTCC TGTTTCTGCC TCCTGAGGGA TAGCATGCAT GGGTTGGGTT
  TTCCAGGCCT AGCTGTCAAA CCTTTCTGAT AAACTCCCCC CCCCCCCAAA GACAGGGTTT
  CTCTGTGTAG CCCTGACTGT CCTGAAACTC ACTCTGTAGA ACAGGCTGGC CTCGAACTCA
  R
  AAATCCATTT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GAAGCATAGC CAACTTCCAT
  TAACATCTTT TTTTTTTTTA AGATTTATTT ATTTTATGTA TATGAGTACA CTGTAGCTGT
  CAGTCACACC AGAAGAGGGC ATTGGATCCC TTTACAGATG GTTGTGAGCC ATCACGTGGT
  TGCTGGGAAC TGAACTCAAG ACCTCTGGAA GAGCAGTCAG TGCTCTTAAC CACCGAGCCA
  TCTCTCCAGC AGCTGCCCCC CCCCCCCAAA CATCTTATAA TGGGAAATAA TGATTCTTAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45744118	mCV25349779	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33153791					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24716862 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608341	regulatory region 608341	934 bp distal
Rr608342	regulatory region 608342	1026 bp distal
Rr608343	regulatory region 608343	846 bp distal
Rr608344	regulatory region 608344	318 bp proximal