rs33154046 SNP Detail

Summary

• ID
  rs33154046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130915068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GAGGTGAGGC TCTGTCTCCT
  Y
  CCACTCTTTC CCCTGAGGCT GGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45243267	mCV22651018	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147598541	ENSMUSSNP3737948	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33154046					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130915068 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr26345	transcription start site region 26345	1989 bp upstream
Tssr26346	transcription start site region 26346	1899 bp upstream
Tssr26347	transcription start site region 26347	1868 bp upstream
Tssr26348	transcription start site region 26348	1751 bp upstream
Tssr26349	transcription start site region 26349	516 bp upstream
Tssr26350	transcription start site region 26350	497 bp upstream
Tssr26351	transcription start site region 26351	475 bp upstream
Tssr26352	transcription start site region 26352	1155 bp downstream
Tssr26353	transcription start site region 26353	1280 bp downstream
Tssr26354	transcription start site region 26354	1352 bp downstream
Tssr26355	transcription start site region 26355	1868 bp downstream