rs33154124 SNP Detail

Summary

• ID
  rs33154124
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127185288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAAAGA AACTTCCTAA
  GTGCTAGGAT TATGGATATG TGCCACCTCA CTTGAGTACA CAGGGTTGGA AGTGAACCCA
  GGATTTTGTA CTTAGGCAAG CACTCTACTA AGTGGGCTAT ATCCCCAGCC CCCTATTTAG
  ATACTTCTCA GAACAGACCC ATAATATTAG TACTATGTGT TTCATTTCTT AATAAGGGAA
  S
  CTCTCAAAGG TGATAAATGT GGTACATTAA TACCACCTAT GGTGGAACAC AAATCCCAGA
  CTGCAGGTTC CCTACTTTAG TTCTCCACGG TCACTTCTGC CAGCCCAGCC TCCTCTCCTA
  GGGCTCAAAC CTTTTGGTGG CTACCTCCCT CTCCTCACCA ACACAGGCCT TGTGAAGATC
  TTGGAGCATG GCACAGGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47263624	NES11575509	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33154124					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263624	NES11575509	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127185288 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	within coordinates
Cpgi19755	CpG island 19755	1767 bp proximal
Tssr69262	transcription start site region 69262	790 bp downstream
Tssr75011	transcription start site region 75011	908 bp upstream