rs33154130 SNP Detail

Summary

• ID
  rs33154130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127185431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCAGAA CAGACCCATA
  ATATTAGTAC TATGTGTTTC ATTTCTTAAT AAGGGAAGCT CTCAAAGGTG ATAAATGTGG
  TACATTAATA CCACCTATGG TGGAACACAA ATCCCAGACT GCAGGTTCCC TACTTTAGTT
  CTCCACGGTC ACTTCTGCCA GCCCAGCCTC CTCTCCTAGG GCTCAAACCT TTTGGTGGCT
  R
  CCTCCCTCTC CTCACCAACA CAGGCCTTGT GAAGATCTTG GAGCATGGCA CAGGCTGCTG
  ATGTCTGCTC TGGTGAAAAG CCCTGCTGGC GGCAGAAGAT AAGTGCGTGG GAGAAGAGGT
  CCAAGATAAT GGCATCCCGC AGGCTCTGCT CAGGAAAGCC AAGCTCCAAG AGCTCAGCAA
  GAACCCTTGG GGGGGGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47263630	NES11575511	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33154130					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263630	NES11575511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127185431 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	within coordinates
Cpgi19755	CpG island 19755	1624 bp proximal
Tssr69262	transcription start site region 69262	933 bp downstream
Tssr75011	transcription start site region 75011	1051 bp upstream
Tssr75012	transcription start site region 75012	1860 bp downstream
Tssr75013	transcription start site region 75013	1886 bp downstream
Tssr75014	transcription start site region 75014	1935 bp downstream
Tssr75015	transcription start site region 75015	1978 bp downstream