rs33154251 SNP Detail

Summary

• ID
  rs33154251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166836931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCTACTC AGCCTGGTCT
  ACAGCACAAG CTTCTTCTTC CAGGAGAGCC AGGACTGTGC CGAGAAACCA CGTCTCAAGC
  AAGCAAGCAA GCAAGCAAGC AAACAGAATT ATTACAGCTA CAAGCAATTG AAAACAGTGA
  CCTTAAAAAA GGCATACAAT ACAATGGGCA AAACGCAAAA CGGAACAAAA TAAAAGCTTC
  R
  CCCATAAGTA GGGAGGTGAG GCCAGAGCTT AAGAGAAACT GATAACTAGG GAGGGCCTCA
  GCTAAAGAAA GTTAAGAGCT ACAGATGCGA ACCAGGAAAC CACGGTTTTC GAATCTTTGC
  ATACTCCACC TCCAGAGCCT GACACACAAG AAGGCTCCAA AAAGGTCTGC TAAACCCAAG
  AGAAGCTTAT GCCAGCAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45243722	mCV23755383	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148260654	ENSMUSSNP5773969	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33154251					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166836931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	239 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	1254 bp upstream
Stau1	staufen double-stranded RNA binding protein 1	within coordinates
Tssr27718	transcription start site region 27718	1087 bp downstream
Tssr27719	transcription start site region 27719	1136 bp downstream
Tssr27720	transcription start site region 27720	1195 bp downstream
Tssr27721	transcription start site region 27721	1210 bp downstream
Tssr27722	transcription start site region 27722	1248 bp downstream