rs33154316 SNP Detail

Summary

• ID
  rs33154316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98179030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CCGGGGGAGC GGCAGGCCGC
  Y
  GGGCACCTCA GGCCTGGGGG GTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45744200	mCV25003301	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148904968	ENSMUSSNP4802827	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33154316					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98179030 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	154 bp upstream
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	within coordinates
Rr615104	regulatory region 615104	1756 bp proximal
Tssr1554	transcription start site region 1554	209 bp upstream
Tssr47433	transcription start site region 47433	447 bp downstream
Tssr47434	transcription start site region 47434	435 bp downstream
Tssr47435	transcription start site region 47435	61 bp downstream
Tssr47436	transcription start site region 47436	93 bp upstream
Tssr47437	transcription start site region 47437	128 bp upstream
Tssr51988	transcription start site region 51988	555 bp upstream
Tssr51989	transcription start site region 51989	544 bp upstream
Tssr51990	transcription start site region 51990	524 bp upstream
Tssr51991	transcription start site region 51991	406 bp upstream
Tssr51992	transcription start site region 51992	351 bp upstream
Tssr51993	transcription start site region 51993	179 bp upstream
Tssr51994	transcription start site region 51994	133 bp upstream
Tssr51995	transcription start site region 51995	within coordinates
Tssr51996	transcription start site region 51996	126 bp downstream
Tssr51997	transcription start site region 51997	164 bp downstream
Tssr51998	transcription start site region 51998	204 bp downstream
Tssr51999	transcription start site region 51999	239 bp downstream
Tssr52000	transcription start site region 52000	260 bp downstream
Tssr52001	transcription start site region 52001	280 bp downstream
Tssr52002	transcription start site region 52002	300 bp downstream
Tssr52003	transcription start site region 52003	342 bp downstream