rs33155318 SNP Detail

Summary

• ID
  rs33155318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120568550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTACTGTCC AAACACCACA CACACATCTA CAAAATTCAG TGCCAGGGAT CACACAGCCC
  AGTTCTGTCA CACATAGGAT CTCTAGTAGG AATATTCATA TCTACACACA CACACACACA
  CTCACACTCA GACATTAAAA TACACCTGCA GCATGTCAGA ATAAACACAT GCTTGTGAGT
  GACTTTACAA ACAAGCATTT CCTCACACAC CCAGTCGACC CATGTAAGCA GACACATAGA
  GACACAGACC AACAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  R
  AAGGAAGGAA GGAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGGTA ATGCACATGT
  TAACAGGAAA TTATAAACGA GAAATTTTAC ATGCCAAAAA AAGAAAGAAA AAAGAAAAAG
  AAACAAAAAT AAAAAAAAAT CCCTCCACGT CCCAGGGTTT GATCGCGAAC ACACTATAAA
  TAGAGAGTTT TCAAGCAGTG GATATTTGCT AACAAACTCA GTAAATACGC CCAAACAAAC
  ACTCACAGCC AAGTCTTGGC ACAATTCCTC TATGGCTCCA ACCCTTAGGC CCCAGCCCCG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45744217	mCV25013753	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33155318					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120568550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16490	CpG island 16490	374 bp proximal
Lhx5	LIM homeobox protein 5	1214 bp upstream
Lhx5as1	LIM homeobox 5, antisense 1	within coordinates
Rr619309	regulatory region 619309	1120 bp distal
Rr619310	regulatory region 619310	145 bp distal
Rr619311	regulatory region 619311	198 bp proximal
Rr619312	regulatory region 619312	1101 bp proximal
Rr619313	regulatory region 619313	1258 bp proximal
Tssr48502	transcription start site region 48502	1406 bp upstream
Tssr48503	transcription start site region 48503	1424 bp upstream
Tssr48504	transcription start site region 48504	1445 bp upstream
Tssr48505	transcription start site region 48505	1464 bp upstream
Tssr48506	transcription start site region 48506	1484 bp upstream
Tssr52923	transcription start site region 52923	1272 bp downstream