rs33155570 SNP Detail

Summary

• ID
  rs33155570
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39535542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGCCA GAGGGGAAAC
  AGTGTCCTCC AGACCGGAGA GGTTATCAGA TTGTCAGTGA TGAGGCTGGA GGAACTTGAT
  AGCTTAAAGC AGAACTGGAT AAAGGATTTA TGTTGATGTC ACAGACAGAG CCAAAACTTT
  AGATGAGAAA ATTTGAATGT CAAAAGAAAC AAAGCTCTCC AAGGAAAAGA ACTGGAGTTA
  K
  AACAGGCAAA TCTGGCTTGT CAAAGAACAG TAGTAATTCA AACAAAAACC CTGAGCATTG
  AATGTTAGTG TTTGCCTAAA CATCATGACA TCCTTTAGTG ACAGAGCAGA GGCATTGCTG
  TGTAGTTAGC AAAGGAGCCG AGAAAAGCTA AGCCCCATTG CTGCGTGTAG CTCAGTGGTA
  GATGCTCAAA ACACGGCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47263374	NES11023156	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33155570					SNP	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263374	NES11023156	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39535542 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	728 bp proximal
Rr409883	regulatory region 409883	1519 bp proximal