rs33156103 SNP Detail

Summary

• ID
  rs33156103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:33857908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGGTCCT CATGAGACAT GTCAGGGACT ATGACACCTA
  ATACCCACAT CTTAGATAGA TGTATGTAGA GCTTGTTAAC TTAGTTAGAA TGGCTAGCCA
  R
  CAAGCCCTAG AGGGCCTCCT GGCCTAAGCT CTCCAGAGCT AACTAGGATG ACAGGTACTG
  CTCCTGACTT TGTTATGTAT GAGTACTGAA GCTAGAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39501079	mCV24098825	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss145493360	ENSMUSSNP2618153	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss325366944	CHEV_17_33775879	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33156103					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33857908 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm20507	predicted gene 20507			within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1			Intron
				Noncoding-Transcript-Variant
Rr392542	regulatory region 392542			559 bp upstream
Rr525901	regulatory region 525901			870 bp proximal
Tssr143785	transcription start site region 143785			1122 bp downstream
Tssr143786	transcription start site region 143786			1104 bp downstream
Tssr143787	transcription start site region 143787			824 bp downstream
Tssr143788	transcription start site region 143788			811 bp downstream
Tssr143789	transcription start site region 143789			793 bp downstream
Tssr147440	transcription start site region 147440			977 bp downstream