rs33156268 SNP Detail

Summary

• ID
  rs33156268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43670793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATATAG ACACCTGTGA
  AAAAGTTGTT TGACTCCCAA AGGATTCAAA ACCTAGGCAG AGGCTGAGAA CCACTAATGT
  AGAGGATCCT GCTTGCAGCA ATCTATGGAT CATAGATCAT CAATAATTCT GCAAGCCTTG
  GAACAAAATT GATTAATAAA TATAGGAGAT TTTTTCCCCC AAGATTAATA ACCAATATCA
  Y
  GAACCTTTCC AAAAACAGCA GCAGTTTGGG TCTCTGCCTG ATGGCAGGCA ACTACTCTTT
  CTGAGCCTGT TCTGACCTGT TTTTCACTGG CTGCTCTGTT GCCTGATGTC TGGGCCAGGG
  CCAGAAGTAA GGGGAAGAGG ACGAAGGCAC CCTTGACTTT TGCAGAGTTA AACACTTGGA
  GAAATTTCAG GAAGAAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39501624	mCV25275182	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145668095	ENSMUSSNP478197	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss325395368	CHEV_17_43496851	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33156268					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43670793 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	549 bp upstream
Rr527086	regulatory region 527086	59 bp proximal
Rr527087	regulatory region 527087	560 bp proximal
Tssr144671	transcription start site region 144671	118 bp upstream
Tssr144672	transcription start site region 144672	420 bp upstream
Tssr144673	transcription start site region 144673	461 bp upstream
Tssr144674	transcription start site region 144674	484 bp upstream
Tssr144675	transcription start site region 144675	521 bp upstream
Tssr148115	transcription start site region 148115	1449 bp downstream