rs33156509 SNP Detail

Summary

• ID
  rs33156509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39535792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGCATT GAATGTTAGT
  GTTTGCCTAA ACATCATGAC ATCCTTTAGT GACAGAGCAG AGGCATTGCT GTGTAGTTAG
  CAAAGGAGCC GAGAAAAGCT AAGCCCCATT GCTGCGTGTA GCTCAGTGGT AGATGCTCAA
  AACACGGCTC TGAGTTCAAT CTTTAGTATC ACGGAAATAA TGCAAAGCAA AGCTACACAT
  Y
  GTGTGACGAA AAGTCAGCAA TGTCATACCC TGGAACACTG AAAGTTAAGA ATTAATAACA
  AAAGCAAAAC ATTTGGGAAC AGATTATTGT TTCCCTGCCT CTCAGCCAAA ATCAAGTAGA
  AAAGTAGAAA TGGGAAACAG ACAAAAGAAA TTAAAACAGC TTGCCTCTGG GCACAGGCCC
  TAGGACAAGA TGCTCTAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47263383	NES11023129	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33156509					SNP	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263383	NES11023129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39535792 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	478 bp proximal
Rr409883	regulatory region 409883	1269 bp proximal