rs33156614 SNP Detail

Summary

• ID
  rs33156614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95996850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAAACT GTTTTGCTAT
  CCAGCAACTG CCACAAGCAG GGAGTCACTC TTTGCTTTAG GTGACCCCAT TTCAACCAGA
  CTGAAGAAGA TCTGGAAACT TCAAGGTCAC ATAATCTATG GCCAGGGCAG CCTGGGTGAA
  TACTGGATGC TTCCAGGAGG CTGGGTAATG CTGGTTGCGC GCTCTACCAG AGGATCAACT
  Y
  CAACAACTAC TACCCAGGTC ACTTTAGGAA AGTTGGTATG AGGCATTACC ACTTAACTGG
  TAACCTGACT AATCTGAGGA CGGTGGTCAG TCTGCAGACA TTGGTATGTG CCACCCAAAA
  AGGAGGCCAG TGCACTAACA CTTTGACTGT GGGATCTGAT GCTAAAAAAC AGACATGGGG
  AATGTGAGTG TCAAGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46779542	NES10726569	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33156614					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779542	NES10726569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95996850 () rs orientation: forward

Symbol	Name	Function Class
Rr397849	regulatory region 397849	646 bp upstream
Rr581141	regulatory region 581141	1999 bp distal
Rr581142	regulatory region 581142	649 bp proximal
Rr581143	regulatory region 581143	720 bp proximal
Rr581144	regulatory region 581144	1189 bp proximal
Rr581145	regulatory region 581145	1793 bp proximal