rs33156617 SNP Detail

Summary

• ID
  rs33156617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95996897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTGCTT TAGGTGACCC
  CATTTCAACC AGACTGAAGA AGATCTGGAA ACTTCAAGGT CACATAATCT ATGGCCAGGG
  CAGCCTGGGT GAATACTGGA TGCTTCCAGG AGGCTGGGTA ATGCTGGTTG CGCGCTCTAC
  CAGAGGATCA ACTTCAACAA CTACTACCCA GGTCACTTTA GGAAAGTTGG TATGAGGCAT
  Y
  ACCACTTAAC TGGTAACCTG ACTAATCTGA GGACGGTGGT CAGTCTGCAG ACATTGGTAT
  GTGCCACCCA AAAAGGAGGC CAGTGCACTA ACACTTTGAC TGTGGGATCT GATGCTAAAA
  AACAGACATG GGGAATGTGA GTGTCAAGGC AGAAGCAGAT AGATGTAGGA GATTGTTACG
  GGTTATGGGT CTCCTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46779545	NES10726571	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33156617					SNP	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779545	NES10726571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95996897 () rs orientation: forward

Symbol	Name	Function Class
Rr397849	regulatory region 397849	599 bp upstream
Rr581142	regulatory region 581142	602 bp proximal
Rr581143	regulatory region 581143	673 bp proximal
Rr581144	regulatory region 581144	1142 bp proximal
Rr581145	regulatory region 581145	1746 bp proximal