rs33156620 SNP Detail

Summary

• ID
  rs33156620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95997018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGTTGC GCGCTCTACC
  AGAGGATCAA CTTCAACAAC TACTACCCAG GTCACTTTAG GAAAGTTGGT ATGAGGCATT
  ACCACTTAAC TGGTAACCTG ACTAATCTGA GGACGGTGGT CAGTCTGCAG ACATTGGTAT
  GTGCCACCCA AAAAGGAGGC CAGTGCACTA ACACTTTGAC TGTGGGATCT GATGCTAAAA
  R
  ACAGACATGG GGAATGTGAG TGTCAAGGCA GAAGCAGATA GATGTAGGAG ATTGTTACGG
  GTTATGGGTC TCCTCCTCTT CCTTATCTTC TTTTATAGTG GTGGTGGCTG TTGCTGAGCA
  TGGCATCCAG AGCCTTGTGC ATGTAAGGCA AGTGCTCTAT GCCTGGGAAG CAACCCTAGG
  GCTTTAATAA AAACCCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46779548	NES10726573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33156620					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779548	NES10726573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95997018 () rs orientation: forward

Symbol	Name	Function Class
Rr397849	regulatory region 397849	478 bp upstream
Rr581142	regulatory region 581142	481 bp proximal
Rr581143	regulatory region 581143	552 bp proximal
Rr581144	regulatory region 581144	1021 bp proximal
Rr581145	regulatory region 581145	1625 bp proximal