rs33156623 SNP Detail

Summary

• ID
  rs33156623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95997102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAACTGGT AACCTGACTA
  ATCTGAGGAC GGTGGTCAGT CTGCAGACAT TGGTATGTGC CACCCAAAAA GGAGGCCAGT
  GCACTAACAC TTTGACTGTG GGATCTGATG CTAAAAAACA GACATGGGGA ATGTGAGTGT
  CAAGGCAGAA GCAGATAGAT GTAGGAGATT GTTACGGGTT ATGGGTCTCC TCCTCTTCCT
  W
  ATCTTCTTTT ATAGTGGTGG TGGCTGTTGC TGAGCATGGC ATCCAGAGCC TTGTGCATGT
  AAGGCAAGTG CTCTATGCCT GGGAAGCAAC CCTAGGGCTT TAATAAAAAC CCATTAAAAG
  CTTTTTAGTA TTCGAGGCCA GCCTGGACTA TAGAGTGAGT TTCAGGACAG CCAGTGCTAC
  ACAGAGAAAG CCTGTCTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46779551	NES10726575	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33156623					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779551	NES10726575	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95997102 () rs orientation: forward

Symbol	Name	Function Class
Rr397849	regulatory region 397849	394 bp upstream
Rr581142	regulatory region 581142	397 bp proximal
Rr581143	regulatory region 581143	468 bp proximal
Rr581144	regulatory region 581144	937 bp proximal
Rr581145	regulatory region 581145	1541 bp proximal