rs33156699 SNP Detail

Summary

• ID
  rs33156699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127187357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATCTCTT CGTCCTTCTT AGCCTCAGTC AAGGGCTCTC
  CAGCCTGGGC TCTGGGACAG CCAGCTCTCC CACTGCAAAG CCCGGTCCTG CCCCTTCTAG
  Y
  GTTTCTTCAG AGGCGGTGAA GCGAGAGGCA GCCAATCCGC AGAGGGCGTC TTCCCAACTT
  GTCTCCCCGG TGACCGTTGT TAAGGAAAGT AGAAAGTACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47263660	NES11575408	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33156699					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263660	NES11575408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127187357 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	within coordinates
Cpgi19755	CpG island 19755	within coordinates
Rnf40	ring finger protein 40	579 bp upstream
Rr400653	regulatory region 400653	233 bp upstream
Rr655845	regulatory region 655845	400 bp proximal
Tssr69263	transcription start site region 69263	529 bp upstream
Tssr69264	transcription start site region 69264	554 bp upstream
Tssr75012	transcription start site region 75012	43 bp upstream
Tssr75013	transcription start site region 75013	within coordinates
Tssr75014	transcription start site region 75014	9 bp downstream
Tssr75015	transcription start site region 75015	52 bp downstream
Tssr75016	transcription start site region 75016	80 bp downstream