rs33157293 SNP Detail

Summary

• ID
  rs33157293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95998535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGTCTT TGTTTTGGGT
  TGCAGTCTTT TCTGCGATCT GTCCAGTGTT TTGATTTCTT TAATTTAACT GTGGGGTTTA
  TAAAACATCT TTGAAGACCT GGGTCTAAGT GAAGAACTGT GGGTGAGGTG AAGTGAAAGA
  AAACTCATCT TTTCACATGG CCTGTAGCAT CCTCTGTTGA TAACACAACT GGTAGCTGCT
  R
  ACATCTATTT CTGTTTAAAA ATTTATAGTT TTACATGTAT GTATGTATGT ATGTATGTAT
  GTGTGCATAT ATGTAGGTGC ACCAACCACA AGTATGAAAT GCTTACACAG GCCAGAAGAG
  GGCGTCTGAA CCTCCTGGAT CTGTGTTACA AACCATTTTA AATCACCATG TGGGAGCTGA
  GAATTGAATT CCAGTATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46779563	NES10726447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33157293					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779563	NES10726447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95998535 () rs orientation: forward

Symbol	Name	Function Class
Rr397849	regulatory region 397849	738 bp downstream
Rr581142	regulatory region 581142	820 bp distal
Rr581143	regulatory region 581143	944 bp distal
Rr581144	regulatory region 581144	475 bp distal
Rr581145	regulatory region 581145	108 bp proximal