rs33157470 SNP Detail

Summary

• ID
  rs33157470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127188103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGACG CCTGCGCTGT
  GCGTCTGGCG GCCGGTGACG TCCGGTGAAA TCCAAGATGG TGGCGCTTGG CTGACCCTAC
  GGTAAGTGCG GACCCCCGTC CGGCGGGGGC GGGGTCCGGG AGATATGTCC AGGGGGACGC
  TCAGGACTGC GGAGCTCCAG ACGCATCCAC AGCTCAGCTC TCTGTTTTCT GCAGGTGACG
  R
  AAGTGCCGCC TCCACCCGCC TGCCAGCCCC GGAGAGCCCT GAGTTGCCCC TCCGCCACCG
  CCGCTATGTC TGGCCTCAGC AACAAGCGCG CCGCCGGCGA CGGGGGCTCA GGACCCCCAG
  AGAAGAAGAT GAACCGCGAG GAGAAGACCA CGACCACTCT AATCGAACCC ATTCGTCTCG
  GCGGCATTTC TTCCACGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47263672	NES11575321	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	G	G	G	G	G	A	G	G	A
ss145881308	ENSMUSSNP8335	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33157470					SNP	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263672	NES11575321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127188103 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	284 bp upstream
Cpgi19755	CpG island 19755	within coordinates
Gm44759	predicted gene 44759	1485 bp downstream
Rnf40	ring finger protein 40	within coordinates
Rr400653	regulatory region 400653	212 bp downstream
Rr655845	regulatory region 655845	2 bp distal
Tssr69263	transcription start site region 69263	206 bp downstream
Tssr69264	transcription start site region 69264	140 bp downstream
Tssr75012	transcription start site region 75012	789 bp upstream
Tssr75013	transcription start site region 75013	741 bp upstream
Tssr75014	transcription start site region 75014	713 bp upstream
Tssr75015	transcription start site region 75015	681 bp upstream
Tssr75016	transcription start site region 75016	653 bp upstream