rs33158126 SNP Detail

Summary

• ID
  rs33158126
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3672707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTCTC ATGAGTCAAC
  CCTGTTGTGG ATGTGGGGCT CTGGATTCTC CTGCCTTGTG TTCTCACCTG TGACTTTGTT
  CCACAGAGGG AGCTGTGGCC AAGAGAGAAG GAGGGTCAGG TCAGTAACCT GTTTTCCCCA
  AGGAGCTGAG TCACTCTTAC CTAGTTGGGC TTGGAATAAA GATTTCACCC TCAGCCATAG
  K
  TAGGAAAGTG GAAGCAGCAG ACTGAGTAGG AATTCCAGAC TAGCCTGGGC TAGAGACCTT
  GTCTCCATAA AGGTTTCTTG TTGTTTGTGA TGGTGTATAC CTACGGACAC TTGGAAGGAG
  GAGTAGGAGG AGTATCAGAT TGAAGCTAGC CTGGGCTGCA TGGGGATAGA GAGAGGGAGA
  CAGGAGAGGA AGCTGTAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46241933	mCV22852711	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		G
ss61076612	NES16054631	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	G	G	T	T
ss148547055	ENSMUSSNP7013632	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33158126					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076612	NES16054631	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3672707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	988 bp distal
Pcp2	Purkinje cell protein 2 (L7)	664 bp downstream
Pet100	PET100 homolog	within coordinates
Rr400746	regulatory region 400746	1290 bp downstream
Rr658948	regulatory region 658948	1402 bp distal
Rr658949	regulatory region 658949	1095 bp distal
Rr658950	regulatory region 658950	1240 bp distal
Rr658951	regulatory region 658951	within coordinates
Tssr76075	transcription start site region 76075	1214 bp downstream
Tssr76076	transcription start site region 76076	1124 bp downstream
Tssr76077	transcription start site region 76077	1098 bp downstream
Tssr80202	transcription start site region 80202	1384 bp upstream
Tssr80203	transcription start site region 80203	803 bp downstream
Tssr80204	transcription start site region 80204	1862 bp downstream
Tssr80205	transcription start site region 80205	1952 bp downstream
Xab2	XPA binding protein 2	1396 bp upstream