rs33158210 SNP Detail

Summary

• ID
  rs33158210
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156714191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGATTGGA ACTTTTGTCT GGGAGTCATC CCCTGCCTGG
  GCAGGGCAGG GCAGGGTAGG GAGATACCAC CCATAGACGA AGAATAAACT GGAACATGGG
  K
  GTGAGGGGAG AGCCTGCGGC CTCAGAGCTT ACGGTTTGTG TTTGGTGTTG ATTCCCCTCA
  CTCCAGATTC TGCCTGATCA ATGCAGGAGT TCTGTATCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45244591	mCV25126959	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss148084866	ENSMUSSNP4242937	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss320582497	CHEV_2_156698007	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33158210					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156714191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			1412 bp distal
Rr568378	regulatory region 568378			1299 bp proximal
Rr568379	regulatory region 568379			1552 bp proximal
Sla2	Src-like-adaptor 2			1880 bp downstream
Tssr21217	transcription start site region 21217			227 bp upstream