rs33158222 SNP Detail

Summary

• ID
  rs33158222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95999884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAACTGTCT ACCCATCCTT AGCATCACCA TGAGCTGGCC
  CATCACAGAG ACGGAGGAAA CCACCCTCTG CTCTGCTGAA GTAGTCACAT TCTGTCAACA
  Y
  GCATCAACAC GTGTGAGAGG AACCAGGAAA AGTCGATGCC GTATTACATC ACTGCACCTT
  TAACCTTTTT TTAGCTGACA GATAGTAAAT GTATGTATCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46779572	NES10726381	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33158222					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779572	NES10726381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95999884 () rs orientation: forward

Symbol	Name	Function Class
Rr581144	regulatory region 581144	1824 bp distal
Rr581145	regulatory region 581145	1220 bp distal
Rr581146	regulatory region 581146	1039 bp proximal
Tssr34591	transcription start site region 34591	1725 bp downstream